Transform the molecule structure data into graphic objects for display.
| Visibility |
various toggles |
The following items can be made independently visible:
- atoms
- bonds
- atom names
- residue names
|
| single res name |
toggle |
If set only a residue name label per residue is displayed instead of one label per atom. |
| Fast Rot |
toggle |
If set the atom structure is replaced on viewer by a lighter one during manimulations. This is useful with big structures to
speedup manipulations. |
| Resolution |
radio buttons |
Sets the resolution of ball and sticks. Useful with big molecules. |
| Visualization format |
list |
Select the visualization format for the molecule. The available formats are:
- Ball and Stick
- Standard format.
- CPK
- Usual space filling format.
- Colored Stick
- Only bonds are show with rounded edges.
- Colored Residue
- Only bonds are show colored by the corresponding residue type.
- Stick
- Only bonds are show colored by the default object color.
- Licorice
- Only bonds are show with rounded edges -like colored stick- but also orphan atoms are show.
- Licorice Stick
- Same as Stick, but with rounded edges.
- Ball and Stick (charge)
- The atoms are colored by the charge value.
- CPK (charge)
- Usual space filling format in which the atoms are colored by the charge value.
- Licorice (charge)
- Only the bonds are show, but with rounded edges. Also orphan atoms are show. The atoms are colored by the charge value.
|
| Bonds format |
radio buttons |
The bonds can be represented as:
- lines
- tube
- all H bonds (normal and H-bonds) as lines
- only the H-bonds as lines
|
| Split Color |
toggle |
Set the coloring of bonds to be two uniform bands instead of an interpolated color between the two atoms colors. |
| Open display parameter settings |
button |
Open an auxiliar screen to set rarely changed graphic display settings. |
| use manual limits |
toggle |
This section appears only if a representation that maps charge values is selected.
For the charge color mapping use the limits entered below. If not set the charge limits are computed by the module and show
in the fields below. |
| min, max |
numeric fields |
Limits of the atoms charge values. Used to color the atoms itself. |