#!/usr/bin/avs -network
version 4.0 (25.137 tt)
module "read field.user.0" -xy 466,62 -ex $Path/avs_library/mongo
module "generate colormap.user.1" -xy 277,62
module "geometry viewer.user.3" -xy 466,188
module "volume bounds.user.4" -xy 618,132 -ex $Path/avs_library/mongo
module "read shak.user.5" -xy 88,132
module "volume render.user.6" -xy 468,132 -ex $Path/avs_library/vol_render
module colorizer.user.7 -xy 278,132 -ex $Path/avs_library/mongo
port_connect "read field.user.0":0 colorizer.user.7:0
port_connect "read field.user.0":0 "volume render.user.6":0
port_connect "read field.user.0":0 "volume bounds.user.4":0
port_connect "generate colormap.user.1":0 colorizer.user.7:1
port_connect "volume bounds.user.4":0 "geometry viewer.user.3":0
port_connect "read shak.user.5":0 "geometry viewer.user.3":0
port_connect "volume render.user.6":0 "geometry viewer.user.3":0
port_connect colorizer.user.7:0 "geometry viewer.user.3":1
parm_set "generate colormap.user.1":colormap "{ \
{0.666666687,1,1,0}\
{0.664052308,1,1,0}\
{0.661437929,1,1,0}\
{0.65882355,1,1,0}\
{0.656209171,1,1,0}\
{0.653594792,1,1,0}\
{0.650980413,1,1,0}\
{0.648366034,1,1,0}\
{0.645751655,1,1,0}\
{0.643137276,1,1,2.49999994e-05}\
{0.640522897,1,1,9.99999975e-05}\
{0.637908518,1,1,0.000156249982}\
{0.635294139,1,1,0.000224999996}\
{0.63267976,1,1,0.000625000044}\
{0.630065382,1,1,0.000625000044}\
{0.627451003,1,1,0.000625000044}\
{0.624836624,1,1,0.000625000044}\
{0.622222245,1,1,0.000711111119}\
{0.619607866,1,1,0.000802777708}\
{0.616993487,1,1,0.000899999985}\
{0.614379108,1,1,0.00122500001}\
{0.611764729,1,1,0.00122500001}\
{0.60915035,1,1,0.00122500001}\
{0.606535971,1,1,0.00122500001}\
{0.603921592,1,1,0.00111111102}\
{0.601307213,1,1,0.00100277772}\
{0.598692834,1,1,0.000899999985}\
{0.596078455,1,1,0.00122500001}\
{0.593464077,1,1,0.00111111102}\
{0.590849698,1,1,0.00100277772}\
{0.588235319,1,1,0.000899999985}\
{0.58562094,1,1,0.00159999996}\
{0.583006561,1,1,0.00250000018}\
{0.580392182,1,1,0.00359999994}\
{0.577777803,1,1,0.00422499981}\
{0.575163424,1,1,0.00562500022}\
{0.572549045,1,1,0.00587777793}\
{0.569934666,1,1,0.00613611098}\
{0.567320287,1,1,0.00639999984}\
{0.564705908,1,1,0.0100000007}\
{0.562091529,1,1,0.0103361113}\
{0.55947715,1,1,0.0106777772}\
{0.556862772,1,1,0.0110249994}\
{0.554248393,1,1,0.0143999998}\
{0.551634014,1,1,0.0143999998}\
{0.549019635,1,1,0.0143999998}\
{0.546405256,1,1,0.0143999998}\
{0.543790877,1,1,0.0143999998}\
{0.541176498,1,1,0.0143999998}\
{0.538562119,1,1,0.0143999998}\
{0.53594774,1,1,0.015625}\
{0.533333361,1,1,0.0164694432}\
{0.530718982,1,1,0.0173361134}\
{0.528104603,1,1,0.0182250012}\
{0.525490224,1,1,0.0196000002}\
{0.522875845,1,1,0.0210250039}\
{0.520261467,1,1,0.0225000009}\
{0.517647088,1,1,0.0272250026}\
{0.515032709,1,1,0.0277777798}\
{0.51241833,1,1,0.0283361115}\
{0.509803951,1,1,0.0289000012}\
{0.507189572,1,1,0.0284765642}\
{0.504575193,1,1,0.0280562509}\
{0.501960814,1,1,0.0276390649}\
{0.499346435,1,1,0.0272250026}\
{0.496731997,1,1,0.0272250026}\
{0.494117677,1,1,0.0272250026}\
{0.491503239,1,1,0.0272250026}\
{0.488888919,1,1,0.0272250026}\
{0.486274481,1,1,0.0272250026}\
{0.483660161,1,1,0.0272250026}\
{0.481045723,1,1,0.0280562509}\
{0.478431404,1,1,0.0289000012}\
{0.475816965,1,1,0.0324000008}\
{0.473202646,1,1,0.0333062522}\
{0.470588207,1,1,0.0342250019}\
{0.467973888,1,1,0.03515625}\
{0.465359449,1,1,0.0361000001}\
{0.46274513,1,1,0.0354694426}\
{0.460130692,1,1,0.0348444432}\
{0.457516372,1,1,0.0342250019}\
{0.454901934,1,1,0.0336111113}\
{0.452287614,1,1,0.0330027789}\
{0.449673176,1,1,0.0324000008}\
{0.447058856,1,1,0.0333062522}\
{0.444444418,1,1,0.0342250019}\
{0.441830099,1,1,0.03515625}\
{0.43921566,1,1,0.0361000001}\
{0.436601341,1,1,0.0354694426}\
{0.433986902,1,1,0.0348444432}\
{0.431372583,1,1,0.0342250019}\
{0.428758144,1,1,0.0361000001}\
{0.426143825,1,1,0.0386777744}\
{0.423529387,1,1,0.0413444452}\
{0.420915067,1,1,0.0440999977}\
{0.418300629,1,1,0.0462250002}\
{0.415686309,1,1,0.0483999997}\
{0.413071871,1,1,0.0491361097}\
{0.410457551,1,1,0.049877774}\
{0.407843113,1,1,0.0506249964}\
{0.405228794,1,1,0.0529000014}\
{0.402614355,1,1,0.0529000014}\
{0.400000036,1,1,0.0529000014}\
{0.397385597,1,1,0.0529000014}\
{0.394771278,1,1,0.0529000014}\
{0.392156839,1,1,0.0529000014}\
{0.38954252,1,1,0.0529000014}\
{0.386928082,1,1,0.0552249998}\
{0.384313762,1,1,0.0560111105}\
{0.381699324,1,1,0.0568027757}\
{0.379085004,1,1,0.057599999}\
{0.376470566,1,1,0.0650249943}\
{0.373856246,1,1,0.0650249943}\
{0.371241808,1,1,0.0650249943}\
{0.368627489,1,1,0.0650249943}\
{0.36601305,1,1,0.0650249943}\
{0.363398731,1,1,0.0650249943}\
{0.360784292,1,1,0.0650249943}\
{0.358169973,1,1,0.0675999969}\
{0.355555534,1,1,0.0720027685}\
{0.352941215,1,1,0.0765444487}\
{0.350326777,1,1,0.0812250003}\
{0.347712457,1,1,0.0900000036}\
{0.345098019,1,1,0.0900000036}\
{0.342483699,1,1,0.0900000036}\
{0.339869261,1,1,0.0900000036}\
{0.337254941,1,1,0.0900000036}\
{0.334640503,1,1,0.0888040066}\
{0.332026124,1,1,0.087616004}\
{0.329411745,1,1,0.0864360034}\
{0.326797366,1,1,0.0852639973}\
{0.324182987,1,1,0.0840999931}\
{0.321568608,1,1,0.0900000036}\
{0.318954229,1,1,0.0930250064}\
{0.31633985,1,1,0.0920111164}\
{0.313725471,1,1,0.0910027847}\
{0.311111093,1,1,0.0900000036}\
{0.308496714,1,1,0.0900000036}\
{0.305882335,1,1,0.0900000036}\
{0.303267956,1,1,0.0900000036}\
{0.300653577,1,1,0.0900000036}\
{0.298039198,1,1,0.0900000036}\
{0.295424819,1,1,0.0900000036}\
{0.29281044,1,1,0.0900000036}\
{0.290196061,1,1,0.0900000036}\
{0.287581682,1,1,0.0900000036}\
{0.284967303,1,1,0.090751566}\
{0.282352924,1,1,0.0915062577}\
{0.279738545,1,1,0.0922640711}\
{0.277124166,1,1,0.0930250064}\
{0.274509788,1,1,0.102399997}\
{0.271895409,1,1,0.105624989}\
{0.26928103,1,1,0.108899988}\
{0.266666651,1,1,0.112225004}\
{0.264052272,1,1,0.113906257}\
{0.261437893,1,1,0.115600005}\
{0.258823514,1,1,0.119024999}\
{0.256209135,1,1,0.122499995}\
{0.253594756,1,1,0.122499995}\
{0.250980377,1,1,0.122499995}\
{0.248365998,1,1,0.122499995}\
{0.245751619,1,1,0.122499995}\
{0.24313724,1,1,0.120177776}\
{0.240522861,1,1,0.117877781}\
{0.237908483,1,1,0.115600005}\
{0.235294104,1,1,0.122499995}\
{0.232679725,1,1,0.120177776}\
{0.230065346,1,1,0.117877781}\
{0.227450967,1,1,0.115600005}\
{0.224836588,1,1,0.122499995}\
{0.222222209,1,1,0.120177776}\
{0.21960783,1,1,0.117877781}\
{0.216993451,1,1,0.115600005}\
{0.214379072,1,1,0.115600005}\
{0.211764693,1,1,0.115600005}\
{0.209150314,1,1,0.115600005}\
{0.206535935,1,1,0.114469446}\
{0.203921556,1,1,0.113344446}\
{0.201307178,1,1,0.112225004}\
{0.198692799,1,1,0.193599999}\
{0.19607842,1,1,0.180625007}\
{0.193464041,1,1,0.166056246}\
{0.190849662,1,1,0.152099982}\
{0.188235283,1,1,0.145669445}\
{0.185620904,1,1,0.139377773}\
{0.183006525,1,1,0.133225009}\
{0.180392146,1,1,0.136900008}\
{0.177777767,1,1,0.135669455}\
{0.175163388,1,1,0.134444445}\
{0.172549009,1,1,0.133225009}\
{0.16993463,1,1,0.140625}\
{0.167320251,1,1,0.141564056}\
{0.164705873,1,1,0.142506242}\
{0.162091494,1,1,0.143451557}\
{0.159477115,1,1,0.144400001}\
{0.156862736,1,1,0.148224995}\
{0.154248357,1,1,0.146944433}\
{0.151633978,1,1,0.145669445}\
{0.149019599,1,1,0.144400001}\
{0.14640522,1,1,0.148224995}\
{0.143790841,1,1,0.148224995}\
{0.141176462,1,1,0.148224995}\
{0.138562083,1,1,0.148224995}\
{0.135947704,1,1,0.152099982}\
{0.133333325,1,1,0.158006236}\
{0.130718946,1,1,0.164024994}\
{0.128104568,1,1,0.168099999}\
{0.125490189,1,1,0.169469446}\
{0.12287581,1,1,0.170844436}\
{0.120261431,1,1,0.172224998}\
{0.117647052,1,1,0.184900001}\
{0.115032673,1,1,0.186336115}\
{0.112418294,1,1,0.187777787}\
{0.109803915,1,1,0.189225003}\
{0.107189536,1,1,0.193599999}\
{0.104575157,1,1,0.198024988}\
{0.101960778,1,1,0.202499986}\
{0.0993463993,1,1,0.211600006}\
{0.0967320204,1,1,0.211600006}\
{0.0941176414,1,1,0.211600006}\
{0.0915032625,1,1,0.211600006}\
{0.0888888836,1,1,0.225624993}\
{0.0862745047,1,1,0.225624993}\
{0.0836601257,1,1,0.225624993}\
{0.0810457468,1,1,0.225624993}\
{0.0784313679,1,1,0.225624993}\
{0.0758169889,1,1,0.230399996}\
{0.07320261,1,1,0.232806265}\
{0.0705882311,1,1,0.235225007}\
{0.0679738522,1,1,0.25}\
{0.0653594732,1,1,0.25}\
{0.0627450943,1,1,0.25}\
{0.0601307154,1,1,0.25}\
{0.0575163364,1,1,0.265224993}\
{0.0549019575,1,1,0.268669426}\
{0.0522875786,1,1,0.272136092}\
{0.0496731997,1,1,0.275624961}\
{0.0470588207,1,1,0.27387774}\
{0.0444444418,1,1,0.272136092}\
{0.0418300629,1,1,0.270399988}\
{0.0392156839,1,1,0.270399988}\
{0.036601305,1,1,0.270399988}\
{0.0339869261,1,1,0.270399988}\
{0.0313725471,1,1,0.272136092}\
{0.0287581682,1,1,0.27387774}\
{0.0261437893,1,1,0.275624961}\
{0.0235294104,1,1,0.275624961}\
{0.0209150314,1,1,0.275624961}\
{0.0183006525,1,1,0.275624961}\
{0.0156862736,1,1,0.291600019}\
{0.0130718946,1,1,0.297025025}\
{0.0104575157,1,1,0.30250001}\
{0.00784313679,1,1,0.308025002}\
{0.00522875786,1,1,0.311736107}\
{0.00261437893,1,1,0.315469444}\
{0,1,1,0.319224983}\
}"
geom_set_scene -scene "geometry viewer.user.3"
geom_set_camera_name "Camera 1"
geom_resize_camera -view "Camera 1" 571 567
#
# State for view: Camera 1
#
geom_set_position -view "Camera 1" 0 0 -12
geom_set_renderer "Software Renderer" -view "Camera 1"
geom_set_view_modes -depth_cue 0 -view "Camera 1"
geom_set_view_modes -z_buffer 1 -view "Camera 1"
geom_set_camera_params -view "Camera 1" -front -88 -back 112
geom_set_depth_cue_params "Camera 1" -scale 0.1
#
# Light state
#
geom_set_light -light 1 -type directional -state 1
geom_set_light -type ambient -state 1
#
# State for object: top
#
geom_set_cur_cli_obj top
geom_set_matrix   -mat \
                  1.0609    0    0    0 \
                    0    0    -1.0609    0 \
                    0    1.0609    0    0 \
                    -3.33333    -3.79217    2.8867    1 
geom_set_position   0 0 -2.67456e-07
geom_set_obj_window 0 6.284 0 5.442 0 9.532
#
# State for object: bounds
#
geom_set_cur_cli_obj -push
geom_set_name_context "volume bounds.user.4"
geom_create_obj bounds -mod "volume bounds.user.4"
geom_set_trans_mode parent
geom_set_texture dynamic
geom_set_obj_window 0 6.284 0 5.442 0 9.532
geom_set_name_context
geom_set_cur_cli_obj -pop
#
# State for object: bru+h2oc.0
#
geom_set_cur_cli_obj -push
geom_set_name_context "read shak.user.5"
geom_create_obj bru+h2oc.0 -mod "read shak.user.5"
geom_set_matrix   -mat \
                  1    0    0    0 \
                    0    1    0    0 \
                    0    0    1    0 \
                    -3.142    -2.721    -3.5745    1 
geom_set_position   3.142 2.721 3.5745
geom_set_texture dynamic
geom_set_name_context
geom_set_cur_cli_obj -pop
#
# State for object: "volume render"
#
geom_set_cur_cli_obj -push
geom_set_name_context "volume render.user.6"
geom_create_obj "volume render" -mod "volume render.user.6"
geom_set_trans_mode parent
geom_set_texture dynamic
geom_set_obj_window 0 6.284 0 5.442 0 9.532
geom_set_name_context
geom_set_cur_cli_obj -pop
shell "ui" shell
 panel Application -w app_panel -p ui -xy 0,0 -wh 260,1014
  panel "Top Level Stack" -w master_stack -p Application -xy 2,99 -wh 256,671
   panel "read field.user.0" -w panel -p "Top Level Stack" -xy 0,128 -wh 255,324
    manipulator "read field.user.0:Read Field Browser" -w browser -p "read field.user.0" \
        -xy 10,10 -wh 235,196
    manipulator "read field.user.0:Data Conversion" -w radio_buttons -p "read field.user.0" \
        -xy 10,205 -wh 118,43
    manipulator "read field.user.0:Read Status" -w textblock -p "read field.user.0" \
        -xy 10,249 -wh 236,64
   panel "generate colormap.user.1" -w panel -p "Top Level Stack" \
       -xy 0,107 -wh 255,564
    manipulator "generate colormap.user.1:colormap" -w color_editor -p "generate colormap.user.1" \
        -xy 10,10 -wh 236,415
    manipulator "generate colormap.user.1:lo value" -w dial -p "generate colormap.user.1" \
        -xy 10,426 -wh 90,129
    manipulator "generate colormap.user.1:hi value" -w dial -p "generate colormap.user.1" \
        -xy 100,426 -wh 90,129
   panel "volume bounds.user.4" -w panel -p "Top Level Stack" \
       -xy 0,128 -wh 138,192
    manipulator "volume bounds.user.4:Hull" -w toggle -p "volume bounds.user.4" \
        -xy 10,10 -wh 118,21
    manipulator "volume bounds.user.4:Min I" -w toggle -p "volume bounds.user.4" \
        -xy 10,30 -wh 118,21
    manipulator "volume bounds.user.4:Max I" -w toggle -p "volume bounds.user.4" \
        -xy 10,52 -wh 118,21
    manipulator "volume bounds.user.4:Min J" -w toggle -p "volume bounds.user.4" \
        -xy 10,75 -wh 118,21
    manipulator "volume bounds.user.4:Max J" -w toggle -p "volume bounds.user.4" \
        -xy 10,95 -wh 118,21
    manipulator "volume bounds.user.4:Min K" -w toggle -p "volume bounds.user.4" \
        -xy 10,118 -wh 118,21
    manipulator "volume bounds.user.4:Max K" -w toggle -p "volume bounds.user.4" \
        -xy 10,140 -wh 118,21
    manipulator "volume bounds.user.4:Colored Bounds" -w toggle -p "volume bounds.user.4" \
        -xy 10,160 -wh 118,21
 panel "read shak.user.5" -w panel -p ui -xy 962,15 -wh 270,600\
   -P title string "Read Shak Controls"
  manipulator "read shak.user.5:Schakal File" -w browser -p "read shak.user.5" \
      -xy 10,19 -wh 236,340
  panel page.1 -w panel -p "read shak.user.5" -xy 5,380 -wh 255,210
   manipulator "read shak.user.5:show cell" -w toggle -p page.1 \
       -xy 125,5 -wh 118,21
   manipulator "read shak.user.5:show labels" -w toggle -p page.1 \
       -xy 125,25 -wh 118,21
   manipulator "read shak.user.5:show title" -w toggle -p page.1 \
       -xy 125,48 -wh 118,21
   manipulator "read shak.user.5:representation" -w radio_buttons -p page.1 \
       -xy 5,5 -wh 118,43
   manipulator "read shak.user.5:bond size" -w dial -p page.1 \
       -xy 95,70 -wh 90,129
   manipulator "read shak.user.5:atom radius" -w dial -p page.1 \
       -xy 5,70 -wh 90,129
 panel "geometry viewer.user.3!display" -w container -p ui -xy 318,338 -wh 611,657\
   -P zoom_coords string "0 0 0 0 0 <$NULL> 0 0 0 0"
manipulator "geometry viewer.user.3":object -w none
# End of file